Workshop: Pipelines on GenomeDK
Are you a student or academic, current or future user of the GenomeDK high-performance computing (HPC) system? Or are you just curious about HPC and how you can utilize it in your work? Do you need to learn to use GenomeDK, or wish to become a better and more organized user?
Then join us in this series of GenomeDK workshops where we guide you from a general introduction to advanced usage. Each workshop targets increasing difficulty levels, so you can join the sessions that fit you best. The third workshop is for creating reproducible pipelines.
June 4, 2025, 10:00-14:00 @ 1253-317 (William Scharff)
Intended audience: For users of GenomeDK who want to learn building complex and reproducible pipelines. Some of the content might be bioinformatics-specific.
Topics:
- Why pipelines?
- Main pipeline languages
- Think through your pipeline architecture
- Dependencies
- Set software up and prepare your first pipeline
- Submit!
- Polish your resource requirements
- Wrap up
This workshop will be hosted by Samuele Soraggi (BiRC, MBG) and Dan Søndergaard (GenomeDK).
Signing up
Each workshop is scheduled for four hours, including a 45 min. lunch break. There will be cake, coffee, and tea for attendants, so please remember to sign up! There are 30 seats available and a waiting list.